PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00815g00352.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 350aa    MW: 38595.7 Da    PI: 7.5205
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00815g00352.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-0798122126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt+lC+ f++ G C+y  +C+FaHg
  Peaxi162Scf00815g00352.1  98 FKTKLCCKFRA-GVCPYITNCNFAHG 122
                               69*********.*************8 PP

2zf-CCCH19.32e-06178198626
                               -SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                               C+ f+    C+yG++C+F H+
  Peaxi162Scf00815g00352.1 178 CKKFYTEEGCPYGESCTFLHD 198
                               99999999************7 PP

3zf-CCCH44.32.9e-14233258126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt++C+ +  tG+C++G++C+FaHg
  Peaxi162Scf00815g00352.1 233 WKTRICNKWETTGYCPFGSKCHFAHG 258
                               8************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.33E-895128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-1495130IPR000571Zinc finger, CCCH-type
SMARTSM003560.01497123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.41897124IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-598122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.563172200IPR000571Zinc finger, CCCH-type
SMARTSM003560.37172199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-6173200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-8174200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-10229263IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-17229263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422232260IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-9232259IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-11233258IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDFMGEAGPD STASGGAFDS WGPNFSDQAV WATEDDYRAW NVGSFNETPS NSSQDGRHSQ  60
NRSGSEPPNK RSRNAQGSDA HVINTNTNNA KTIGKMFFKT KLCCKFRAGV CPYITNCNFA  120
HGIEELRKPP PNWQEIVAAH EGDRGGVIVE HREEHQIPIL TSPDSRVESL RSSKLRHCKK  180
FYTEEGCPYG ESCTFLHDEQ SRARESVAIS VTPTVGGFGN NATGAASLKP SNWKTRICNK  240
WETTGYCPFG SKCHFAHGVA ELNKYGGGPV ETDGRDSYSL PSDLKQGDGS FKTTETMVPK  300
IILAPHHLGQ GVQGQRVTGT GERPGRRFFQ KWKGPDRISK IYGDWIDDIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347340.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
RefseqXP_015164273.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
RefseqXP_015164274.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ9LQM31e-115C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLM1CK600.0M1CK60_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000692460.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-114C3H family protein